Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02619.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3858
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32


Found at i:3716 original size:12 final size:12

Alignment explanation


    Indices: 3699--3724  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       3689 TACATATATG

                        
       3699 TACACACATACA
          1 TACACACATACA

                        
       3711 TACACACATACA
          1 TACACACATACA

              
       3723 TA
          1 TA

       3725 TAGCTAAATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19


Consensus pattern (12 bp):   
TACACACATACA
Done.