Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02629.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 855

Length: 1425
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37


Found at i:182 original size:8 final size:8

Alignment explanation


    Indices: 169--198  Score: 60
    Period size: 8  Copynumber: 3.8  Consensus size: 8

        159 CAAATCTCGA

                    
        169 TTTTTTCT
          1 TTTTTTCT

                    
        177 TTTTTTCT
          1 TTTTTTCT

                    
        185 TTTTTTCT
          1 TTTTTTCT

                  
        193 TTTTTT
          1 TTTTTT

        199 TGAAGATTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   22  1.00

ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90


Consensus pattern (8 bp):   
TTTTTTCT
Done.