Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02630.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2220
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:900 original size:44 final size:44

Alignment explanation


    Indices: 837--968  Score: 210
    Period size: 44  Copynumber: 3.0  Consensus size: 44

        827 TTCTCTTTCT

                 *                 *     *        *     
        837 ATGCTTAAAATGGTCAAATTCTGATATTAGTCCTTGTGAATTTA
          1 ATGCTAAAAATGGTCAAATTCTGCTATTAATCCTTGTGGATTTA

                                      *    *            
        881 ATGCTAAAAATGGTCAAATTCTGCTACTAATTCTTGTGGATTTA
          1 ATGCTAAAAATGGTCAAATTCTGCTATTAATCCTTGTGGATTTA

                                                        
        925 ATGCTAAAAATGGTCAAATTCTGCTATTAATCCTTGTGGATTTA
          1 ATGCTAAAAATGGTCAAATTCTGCTATTAATCCTTGTGGATTTA

        969 GTTTTTTGTA


Statistics
Matches: 80,  Mismatches: 8, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  44   80  1.00

ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39


Consensus pattern (44 bp):   
ATGCTAAAAATGGTCAAATTCTGCTATTAATCCTTGTGGATTTA
Done.