Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02637.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3803
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33


Found at i:2564 original size:4 final size:4

Alignment explanation


    Indices: 2555--2606  Score: 59
    Period size: 4  Copynumber: 13.0  Consensus size: 4

       2545 TCTTTTGTCA

                              *         *         *         *         *
       2555 ATGT ATGT ATGT ATGC ATGT ATGC ATGT ATGC ATGT ATGC ATGT ATGC
          1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT

                
       2603 ATGT
          1 ATGT

       2607 CATTTGTTTT


Statistics
Matches: 38,  Mismatches: 10, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
   4   38  1.00

ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40


Consensus pattern (4 bp):   
ATGT

Found at i:2568 original size:8 final size:8

Alignment explanation


    Indices: 2555--2606  Score: 95
    Period size: 8  Copynumber: 6.5  Consensus size: 8

       2545 TCTTTTGTCA

                   *
       2555 ATGTATGT
          1 ATGTATGC

                    
       2563 ATGTATGC
          1 ATGTATGC

                    
       2571 ATGTATGC
          1 ATGTATGC

                    
       2579 ATGTATGC
          1 ATGTATGC

                    
       2587 ATGTATGC
          1 ATGTATGC

                    
       2595 ATGTATGC
          1 ATGTATGC

                
       2603 ATGT
          1 ATGT

       2607 CATTTGTTTT


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   8   43  1.00

ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40


Consensus pattern (8 bp):   
ATGTATGC

Done.