Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02641.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1206
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32


Found at i:1146 original size:21 final size:21

Alignment explanation


    Indices: 1096--1148  Score: 70
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       1086 TCTAAACACG

                  * *       *    
       1096 TGTGTTTAAATATGTAGCATA
          1 TGTGTTGAGATATGTAACATA

                             *   
       1117 TGTGTTGAGATATGTAATATA
          1 TGTGTTGAGATATGTAACATA

                       
       1138 TGTGTTGAGAT
          1 TGTGTTGAGAT

       1149 TCCGACCCTC


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.30, C:0.02, G:0.25, T:0.43


Consensus pattern (21 bp):   
TGTGTTGAGATATGTAACATA
Done.