Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02641.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 764

Length: 1274
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33


Found at i:1214 original size:21 final size:21

Alignment explanation


    Indices: 1164--1216  Score: 70
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       1154 TCTAAACACG

                  * *       *    
       1164 TGTGTTTAAATATGTAGCATA
          1 TGTGTTGAGATATGTAACATA

                             *   
       1185 TGTGTTGAGATATGTAATATA
          1 TGTGTTGAGATATGTAACATA

                       
       1206 TGTGTTGAGAT
          1 TGTGTTGAGAT

       1217 TCCGACCCTC


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.30, C:0.02, G:0.25, T:0.43


Consensus pattern (21 bp):   
TGTGTTGAGATATGTAACATA
Done.