Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02647.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2260
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27


Found at i:203 original size:6 final size:6

Alignment explanation


    Indices: 192--227  Score: 54
    Period size: 6  Copynumber: 6.0  Consensus size: 6

        182 CAGCTCCTAA

                                 *         *         
        192 TAGAGG TAGAGG TAGAGG GAGAGG TAGGGG TAGAGG
          1 TAGAGG TAGAGG TAGAGG TAGAGG TAGAGG TAGAGG

        228 GCGTGGAGGA


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.31, C:0.00, G:0.56, T:0.14


Consensus pattern (6 bp):   
TAGAGG

Found at i:216 original size:18 final size:18

Alignment explanation


    Indices: 193--228  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        183 AGCTCCTAAT

                              
        193 AGAGGTAGAGGTAGAGGG
          1 AGAGGTAGAGGTAGAGGG

                    *         
        211 AGAGGTAGGGGTAGAGGG
          1 AGAGGTAGAGGTAGAGGG

        229 CGTGGAGGAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.31, C:0.00, G:0.58, T:0.11


Consensus pattern (18 bp):   
AGAGGTAGAGGTAGAGGG
Done.