Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02650.N9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 406

Length: 677
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26


Found at i:440 original size:15 final size:15

Alignment explanation


    Indices: 400--440  Score: 55
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        390 CGAAGAAAAT

                 *         
        400 GAAGAAGAAGAGGAA
          1 GAAGAGGAAGAGGAA

               *  *        
        415 GAAAAGAAAGAGGAA
          1 GAAGAGGAAGAGGAA

                       
        430 GAAGAGGAAGA
          1 GAAGAGGAAGA

        441 TCTAGAAAAG


Statistics
Matches: 21,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00


Consensus pattern (15 bp):   
GAAGAGGAAGAGGAA
Done.