Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02654.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1696
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25


Found at i:138 original size:12 final size:12

Alignment explanation


    Indices: 121--152  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        111 CGAACAAATC

                      * 
        121 ATGATGATCATG
          1 ATGATGATCACG

                        
        133 ATGATGATCACG
          1 ATGATGATCACG

                    
        145 ATGATGAT
          1 ATGATGAT

        153 GATCATAAGC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.34, C:0.09, G:0.25, T:0.31


Consensus pattern (12 bp):   
ATGATGATCACG
Done.