Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02657.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 453

Length: 756
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30


Found at i:720 original size:25 final size:25

Alignment explanation


    Indices: 692--742  Score: 93
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        682 AAGAGCGAAT

                                     
        692 ATGTTCCGTTTTGTATCAAAGAACC
          1 ATGTTCCGTTTTGTATCAAAGAACC

                          *          
        717 ATGTTCCGTTTTGTGTCAAAGAACC
          1 ATGTTCCGTTTTGTATCAAAGAACC

             
        742 A
          1 A

        743 ATTACTTCTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35


Consensus pattern (25 bp):   
ATGTTCCGTTTTGTATCAAAGAACC
Done.