Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02690.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2906
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:1387 original size:25 final size:25

Alignment explanation


    Indices: 1359--1410  Score: 77
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       1349 AAATAAATAA

                                     
       1359 AAAAATTTAATAATTTTTAGAAACG
          1 AAAAATTTAATAATTTTTAGAAACG

                *    * *             
       1384 AAAATTTTATTGATTTTTAGAAACG
          1 AAAAATTTAATAATTTTTAGAAACG

              
       1409 AA
          1 AA

       1411 CGAAACATAA


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.48, C:0.04, G:0.10, T:0.38


Consensus pattern (25 bp):   
AAAAATTTAATAATTTTTAGAAACG
Done.