Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02694.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2964
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:2820 original size:30 final size:31

Alignment explanation


    Indices: 2784--2851  Score: 95
    Period size: 30  Copynumber: 2.2  Consensus size: 31

       2774 GGTTTCATTT

                           *                
       2784 CAGTCACTAAAC-TTTTAAAAAA-TAACAAAA
          1 CAGTCACT-AACGTTATAAAAAAGTAACAAAA

                                    *      
       2814 CAGTCACTAACGTTATAAAAAAGTGACAAAA
          1 CAGTCACTAACGTTATAAAAAAGTAACAAAA

                   
       2845 CAGTCAC
          1 CAGTCAC

       2852 CGGTTAACAG


Statistics
Matches: 34,  Mismatches: 2, Indels: 3
        0.87            0.05        0.08

Matches are distributed among these distances:
  29    3  0.09
  30   17  0.50
  31   14  0.41

ACGTcount: A:0.51, C:0.19, G:0.09, T:0.21


Consensus pattern (31 bp):   
CAGTCACTAACGTTATAAAAAAGTAACAAAA

Done.