Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02706.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2384
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27


Found at i:45 original size:3 final size:3

Alignment explanation


    Indices: 37--80  Score: 54
    Period size: 3  Copynumber: 14.3  Consensus size: 3

         27 GCCGCCATGG

                                                           *           
         37 CTT CTT CTT CTT CTT CTT CTT CTAAT -TT CTT CTT CAT CTT CTT C
          1 CTT CTT CTT CTT CTT CTT CTT CT--T CTT CTT CTT CTT CTT CTT C

         81 CTCGTGTTAT


Statistics
Matches: 36,  Mismatches: 2, Indels: 6
        0.82            0.05        0.14

Matches are distributed among these distances:
   2    1  0.03
   3   33  0.92
   4    1  0.03
   5    1  0.03

ACGTcount: A:0.07, C:0.32, G:0.00, T:0.61


Consensus pattern (3 bp):   
CTT

Done.