Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02027.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 380

Length: 634
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30


Found at i:306 original size:32 final size:32

Alignment explanation


    Indices: 269--332  Score: 110
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        259 ACGGGGGTCA

                                *           
        269 TGCTGGCGCTTGGCGTGAGGGGTACGGAGGCG
          1 TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG

                    *                       
        301 TGCTGGCGTTTGGCGTGAGGAGTACGGAGGCG
          1 TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG

        333 AAAGCGTAGG


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  32   30  1.00

ACGTcount: A:0.11, C:0.17, G:0.52, T:0.20


Consensus pattern (32 bp):   
TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
Done.