Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02717.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 476

Length: 794
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27


Found at i:53 original size:27 final size:27

Alignment explanation


    Indices: 1--53  Score: 88
    Period size: 27  Copynumber: 2.0  Consensus size: 27

                                **     
          1 ATAAAAGCTAACTCAGTGGGTGTTTCA
          1 ATAAAAGCTAACTCAGTGGGACTTTCA

                                      
         28 ATAAAAGCTAACTCAGTGGGACTTTC
          1 ATAAAAGCTAACTCAGTGGGACTTTC

         54 CATTGACACA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28


Consensus pattern (27 bp):   
ATAAAAGCTAACTCAGTGGGACTTTCA
Done.