Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02721.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3422
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:2576 original size:28 final size:27

Alignment explanation


    Indices: 2502--2576  Score: 75
    Period size: 31  Copynumber: 2.7  Consensus size: 27

       2492 CAAGAGTTAG

                                 *     
       2502 ATTA-TTTTTATTAAAA--AATGATAA
          1 ATTATTTTTTATTAAAATTAAAGATAA

                                            
       2526 ATTAATTTTTTATATATTAAATTAAAGAATAA
          1 ATT-ATTTTTTAT-TA--AAATTAAAG-ATAA

                               
       2558 ATTATTTTTTATTAAAATT
          1 ATTATTTTTTATTAAAATT

       2577 TTTATCTTTA


Statistics
Matches: 42,  Mismatches: 1, Indels: 12
        0.76            0.02        0.22

Matches are distributed among these distances:
  24    3  0.07
  25    1  0.02
  26    7  0.17
  27    2  0.05
  28    5  0.12
  29    3  0.07
  30    2  0.05
  31   12  0.29
  32    7  0.17

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.51


Consensus pattern (27 bp):   
ATTATTTTTTATTAAAATTAAAGATAA
Done.