Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02029.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 990

Length: 1651
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33


Found at i:1511 original size:25 final size:23

Alignment explanation


    Indices: 1478--1524  Score: 58
    Period size: 25  Copynumber: 2.0  Consensus size: 23

       1468 ACGCCATTTT

                *             *      
       1478 TTTTTTATTTCTCTTCTATTTTCTC
          1 TTTTGTATTT-TCTT-TAGTTTCTC

                                  
       1503 TTTTGTATTTTCTTTAGTTTCT
          1 TTTTGTATTTTCTTTAGTTTCT

       1525 TCATGCTCTT


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  23    7  0.35
  24    4  0.20
  25    9  0.45

ACGTcount: A:0.09, C:0.15, G:0.04, T:0.72


Consensus pattern (23 bp):   
TTTTGTATTTTCTTTAGTTTCTC
Done.