Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02742.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2229
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28


Found at i:1057 original size:96 final size:96

Alignment explanation


    Indices: 887--1081  Score: 327
    Period size: 96  Copynumber: 2.0  Consensus size: 96

        877 TTTGATAAAG

                                           **       *                        
        887 ATACCTACGTGAAGCCACGCCGAGGGAGTACTGCAAGTGAGAGCCAAGCAAATTCCACAAAGGAG
          1 ATACCTACGTGAAGCCACGCCGAGGGAGTACAACAAGTGACAGCCAAGCAAATTCCACAAAGGAG

            *                              
        952 TCTAAACGTCATGGCAGCAAGGATCCAAAAA
         66 CCTAAACGTCATGGCAGCAAGGATCCAAAAA

                                                *                            
        983 ATACCTACGTGAAGCCACGCCGAGGGAGTACAACAATTGACAGCCAAGCAAATTCCACAAAGGAG
          1 ATACCTACGTGAAGCCACGCCGAGGGAGTACAACAAGTGACAGCCAAGCAAATTCCACAAAGGAG

                *                   *      
       1048 CCTAGACGTCATGGCAGCAAGGATTCAAAAA
         66 CCTAAACGTCATGGCAGCAAGGATCCAAAAA

               
       1079 ATA
          1 ATA

       1082 AATTATCTCC


Statistics
Matches: 92,  Mismatches: 7, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  96   92  1.00

ACGTcount: A:0.38, C:0.24, G:0.24, T:0.14


Consensus pattern (96 bp):   
ATACCTACGTGAAGCCACGCCGAGGGAGTACAACAAGTGACAGCCAAGCAAATTCCACAAAGGAG
CCTAAACGTCATGGCAGCAAGGATCCAAAAA
Done.