Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02743.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2912
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35


Found at i:1918 original size:29 final size:29

Alignment explanation


    Indices: 1885--1942  Score: 107
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1875 AATTATTTTT

                                         
       1885 CGTTAACAGATTTACCATTTTTTGTTATA
          1 CGTTAACAGATTTACCATTTTTTGTTATA

                     *                   
       1914 CGTTAACAGTTTTACCATTTTTTGTTATA
          1 CGTTAACAGATTTACCATTTTTTGTTATA

       1943 GACTTGACTG


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.26, C:0.14, G:0.10, T:0.50


Consensus pattern (29 bp):   
CGTTAACAGATTTACCATTTTTTGTTATA

Found at i:2046 original size:27 final size:27

Alignment explanation


    Indices: 2015--2071  Score: 105
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       2005 TCCACCATCC

                                    *  
       2015 CTTTCCCTACTTTGATTCTCTCCCTCT
          1 CTTTCCCTACTTTGATTCTCTCCCCCT

                                       
       2042 CTTTCCCTACTTTGATTCTCTCCCCCT
          1 CTTTCCCTACTTTGATTCTCTCCCCCT

               
       2069 CTT
          1 CTT

       2072 CCATCTATTC


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.07, C:0.42, G:0.04, T:0.47


Consensus pattern (27 bp):   
CTTTCCCTACTTTGATTCTCTCCCCCT
Done.