Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02744.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1450
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27


Found at i:1115 original size:3 final size:3

Alignment explanation


    Indices: 1102--1135  Score: 50
    Period size: 3  Copynumber: 11.0  Consensus size: 3

       1092 CAGCAACAAT

                                             *          
       1102 TCA TGCA TCA TCA TCA TCA TCA TCA CCA TCA TCA
          1 TCA T-CA TCA TCA TCA TCA TCA TCA TCA TCA TCA

       1136 AAACATGGTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   3   25  0.89
   4    3  0.11

ACGTcount: A:0.32, C:0.35, G:0.03, T:0.29


Consensus pattern (3 bp):   
TCA

Done.