Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02746.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 914

Length: 1524
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36


Found at i:860 original size:60 final size:60

Alignment explanation


    Indices: 776--893  Score: 139
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        766 CACTAGTAGT

                           *                *   *     *                 
        776 CCCAACTATTAGTAACTTTCTTTTTTCGTCAATCAATTATGATAAGTTACAAAATGATCA
          1 CCCAACTATTAGTAAATTTCTTTTTTCGTCAACCAACTATGAAAAGTTACAAAATGATCA

                *                      *    *                 * *      
        836 CCCAGCTATTAGTAAATATT-TTTTTTGGTCACCCAACTATGAAAAGTTATAGAATGAT
          1 CCCAACTATTAGTAAAT-TTCTTTTTTCGTCAACCAACTATGAAAAGTTACAAAATGAT

        894 TACACAATTA


Statistics
Matches: 48,  Mismatches: 9, Indels: 2
        0.81            0.15        0.03

Matches are distributed among these distances:
  60   46  0.96
  61    2  0.04

ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37


Consensus pattern (60 bp):   
CCCAACTATTAGTAAATTTCTTTTTTCGTCAACCAACTATGAAAAGTTACAAAATGATCA
Done.