Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02757.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 830

Length: 1384
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30


Found at i:330 original size:107 final size:107

Alignment explanation


    Indices: 144--357  Score: 428
    Period size: 107  Copynumber: 2.0  Consensus size: 107

        134 GAAAGAGGCA

                                                                             
        144 CATTGAAGTGCCAAGTGAAGTTTACCATATCAGAGAGAGATCGATGCTTCCAGTGCTAAGTGAAA
          1 CATTGAAGTGCCAAGTGAAGTTTACCATATCAGAGAGAGATCGATGCTTCCAGTGCTAAGTGAAA

                                                      
        209 AACTAAGGTACTAGCATCATAATATACATCGTCTATTTTAAC
         66 AACTAAGGTACTAGCATCATAATATACATCGTCTATTTTAAC

                                                                             
        251 CATTGAAGTGCCAAGTGAAGTTTACCATATCAGAGAGAGATCGATGCTTCCAGTGCTAAGTGAAA
          1 CATTGAAGTGCCAAGTGAAGTTTACCATATCAGAGAGAGATCGATGCTTCCAGTGCTAAGTGAAA

                                                      
        316 AACTAAGGTACTAGCATCATAATATACATCGTCTATTTTAAC
         66 AACTAAGGTACTAGCATCATAATATACATCGTCTATTTTAAC

        358 TTAATCATCC


Statistics
Matches: 107,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 107  107  1.00

ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28


Consensus pattern (107 bp):   
CATTGAAGTGCCAAGTGAAGTTTACCATATCAGAGAGAGATCGATGCTTCCAGTGCTAAGTGAAA
AACTAAGGTACTAGCATCATAATATACATCGTCTATTTTAAC
Done.