Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02760.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3284
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30


Found at i:132 original size:7 final size:7

Alignment explanation


    Indices: 120--147  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

        110 AATCCTCGCC

                   
        120 TTAGCCA
          1 TTAGCCA

                   
        127 TTAGCCA
          1 TTAGCCA

                   
        134 TTAGCCA
          1 TTAGCCA

                   
        141 TTAGCCA
          1 TTAGCCA

        148 ATGGCGATTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29


Consensus pattern (7 bp):   
TTAGCCA

Done.