Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02791.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5885
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33


Found at i:221 original size:21 final size:21

Alignment explanation


    Indices: 197--240  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        187 CTGCTTGAAC

                                 
        197 AAGATAGGATAACTTGTTTCT
          1 AAGATAGGATAACTTGTTTCT

                                 
        218 AAGATAGGATAACTTGTTTCT
          1 AAGATAGGATAACTTGTTTCT

              
        239 AA
          1 AA

        241 TATTCTAATT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36


Consensus pattern (21 bp):   
AAGATAGGATAACTTGTTTCT
Done.