Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02792.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4010
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37


Found at i:287 original size:21 final size:21

Alignment explanation


    Indices: 263--306  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        253 AATTAGAATA

                                 
        263 TTAGAAACAAGTTATCCTATC
          1 TTAGAAACAAGTTATCCTATC

                                 
        284 TTAGAAACAAGTTATCCTATC
          1 TTAGAAACAAGTTATCCTATC

              
        305 TT
          1 TT

        307 GTTCAAGCAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36


Consensus pattern (21 bp):   
TTAGAAACAAGTTATCCTATC

Found at i:1271 original size:21 final size:21

Alignment explanation


    Indices: 1245--1301  Score: 64
    Period size: 21  Copynumber: 2.8  Consensus size: 21

       1235 ATATCCTTTT

                            *   *
       1245 CCGGTTCAGTATTTTTGGTGC
          1 CCGGTTCAGTATTTTTAGTGA

                                * 
       1266 CCGGTTCAGT-TGTTTTAGTTA
          1 CCGGTTCAGTAT-TTTTAGTGA

                            
       1287 CCGGTTCAG-ATTTTT
          1 CCGGTTCAGTATTTTT

       1302 TATGTGTTTG


Statistics
Matches: 31,  Mismatches: 3, Indels: 5
        0.79            0.08        0.13

Matches are distributed among these distances:
  20    5  0.16
  21   26  0.84

ACGTcount: A:0.12, C:0.18, G:0.25, T:0.46


Consensus pattern (21 bp):   
CCGGTTCAGTATTTTTAGTGA
Done.