Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00001.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5826
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32


Found at i:1460 original size:6 final size:6

Alignment explanation


    Indices: 1449--1487  Score: 60
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       1439 TATAAATCCT

                            *               *            
       1449 TTTGCC TTTGCC TTCGCC TTTGCC TTTGAC TTTGCC TTT
          1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTT

       1488 TACCTTCTGC


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.03, C:0.31, G:0.15, T:0.51


Consensus pattern (6 bp):   
TTTGCC

Done.