Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00003.P16

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4238
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36


Found at i:1957 original size:10 final size:10

Alignment explanation


    Indices: 1942--1973  Score: 55
    Period size: 10  Copynumber: 3.2  Consensus size: 10

       1932 TTGGTTTTTG

                   *  
       1942 ATCGAGGAAA
          1 ATCGAGGGAA

                      
       1952 ATCGAGGGAA
          1 ATCGAGGGAA

                      
       1962 ATCGAGGGAA
          1 ATCGAGGGAA

              
       1972 AT
          1 AT

       1974 TTGTATCAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  10   21  1.00

ACGTcount: A:0.44, C:0.09, G:0.34, T:0.12


Consensus pattern (10 bp):   
ATCGAGGGAA
Done.