Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00005.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4492
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31


Found at i:3848 original size:5 final size:5

Alignment explanation


    Indices: 3838--3868  Score: 53
    Period size: 5  Copynumber: 6.2  Consensus size: 5

       3828 GACTGGGGAG

                                          *      
       3838 AAGAA AAGAA AAGAA AAGAA AAGAA TAGAA A
          1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A

       3869 CTAACAGCCA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03


Consensus pattern (5 bp):   
AAGAA

Done.