Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00006.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3221
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:1556 original size:30 final size:30

Alignment explanation


    Indices: 1468--1556  Score: 81
    Period size: 30  Copynumber: 2.9  Consensus size: 30

       1458 CGTTACTTCC

                  *         *             * 
       1468 TTGAAATTTTTAATTAAGTACTCCTAAAATTT
          1 TTGAAAATTTTAATTATG-ACTCC-AAAATAT

                     * *      *            
       1500 TTGAAAATTCTCATTAT-TCTCACAAAATAT
          1 TTGAAAATTTTAATTATGACTC-CAAAATAT

                              *        
       1530 TTGAAAATTTTAATTATGCCTCCAAAA
          1 TTGAAAATTTTAATTATGACTCCAAAA

       1557 CTTAGTCCCA


Statistics
Matches: 46,  Mismatches: 9, Indels: 6
        0.75            0.15        0.10

Matches are distributed among these distances:
  30   29  0.63
  31    4  0.09
  32   13  0.28

ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42


Consensus pattern (30 bp):   
TTGAAAATTTTAATTATGACTCCAAAATAT
Done.