Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02043.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3398
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:1840 original size:2 final size:2

Alignment explanation


    Indices: 1833--1882  Score: 100
    Period size: 2  Copynumber: 25.0  Consensus size: 2

       1823 AACGTTTTAT

                                                                          
       1833 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                       
       1875 TC TC TC TC
          1 TC TC TC TC

       1883 GTTTTAATGA


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   48  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
TC

Done.