Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00014.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3726
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32


Found at i:3232 original size:63 final size:63

Alignment explanation


    Indices: 3128--3248  Score: 163
    Period size: 63  Copynumber: 1.9  Consensus size: 63

       3118 GCTGGGTTTA

                                        *   *   *                           
       3128 TAACTTTGCCTTGCGAGCTAAATCCGTGGGCTGATCTTGCGACCTTAAC-CTGTAGGCTTCCCG
          1 TAACTTTGCCTTGCGAGCTAAATCCGTGAGCTAATCCTGCGACCTT-ACTCTGTAGGCTTCCCG

                               **  **                                 
       3191 TAACTTTGCCTTGCGAGCTGGATTTGTGAGCTAATCCTGCGACCTTACTCTGTAGGCT
          1 TAACTTTGCCTTGCGAGCTAAATCCGTGAGCTAATCCTGCGACCTTACTCTGTAGGCT

       3249 CGCTCAAGGT


Statistics
Matches: 50,  Mismatches: 7, Indels: 2
        0.85            0.12        0.03

Matches are distributed among these distances:
  62    2  0.04
  63   48  0.96

ACGTcount: A:0.17, C:0.26, G:0.24, T:0.32


Consensus pattern (63 bp):   
TAACTTTGCCTTGCGAGCTAAATCCGTGAGCTAATCCTGCGACCTTACTCTGTAGGCTTCCCG
Done.