Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00028.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3552
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29


Found at i:17 original size:6 final size:6

Alignment explanation


    Indices: 7--34  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

          1 GAGCCA

                                            
          7 TTTCTG TTTCTG TTTCTG TTTCTG TTTC
          1 TTTCTG TTTCTG TTTCTG TTTCTG TTTC

         35 AGTGAGCAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.00, C:0.18, G:0.14, T:0.68


Consensus pattern (6 bp):   
TTTCTG

Done.