Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00032.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3435
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:2085 original size:23 final size:23

Alignment explanation


    Indices: 2059--2119  Score: 59
    Period size: 23  Copynumber: 2.7  Consensus size: 23

       2049 AAATTGAGCC

                                   
       2059 TATAATCACTATAATTTACAACA
          1 TATAATCACTATAATTTACAACA

                  **   * *      * *
       2082 TATAATTTCTACATTTTACAGCT
          1 TATAATCACTATAATTTACAACA

                   *       
       2105 TATAATCCCTATAAT
          1 TATAATCACTATAAT

       2120 CATGACAGTT


Statistics
Matches: 28,  Mismatches: 10, Indels: 0
        0.74            0.26        0.00

Matches are distributed among these distances:
  23   28  1.00

ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41


Consensus pattern (23 bp):   
TATAATCACTATAATTTACAACA
Done.