Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00048.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5993
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32


Found at i:1450 original size:69 final size:69

Alignment explanation


    Indices: 1339--1477  Score: 269
    Period size: 69  Copynumber: 2.0  Consensus size: 69

       1329 GATAGGAAAA

                                                                    *        
       1339 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTTGTGGTAGG
          1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG

                
       1404 GCTG
         66 GCTG

                                                                             
       1408 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
          1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG

                
       1473 GCTG
         66 GCTG

             
       1477 A
          1 A

       1478 TAGAGTCTTG


Statistics
Matches: 69,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  69   69  1.00

ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28


Consensus pattern (69 bp):   
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Done.