Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02046.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1605
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34


Found at i:1576 original size:23 final size:22

Alignment explanation


    Indices: 1550--1595  Score: 67
    Period size: 23  Copynumber: 2.0  Consensus size: 22

       1540 TGTGATGACG

                                    
       1550 TTATCTT-ATAAATATGTATGAAT
          1 TTATCTTGA-AAATATGT-TGAAT

                                  
       1573 TTATCTTGAAAATATGTTGAAT
          1 TTATCTTGAAAATATGTTGAAT

             
       1595 T
          1 T

       1596 GGTTTGGTTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  22    6  0.27
  23   15  0.68
  24    1  0.05

ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48


Consensus pattern (22 bp):   
TTATCTTGAAAATATGTTGAAT
Done.