Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00071.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3951
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33


Found at i:3476 original size:24 final size:24

Alignment explanation


    Indices: 3449--3495  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       3439 GAACATCAAT

                                    
       3449 TTTTAAGCTCAAAGTTGACTCGAA
          1 TTTTAAGCTCAAAGTTGACTCGAA

                                   
       3473 TTTTAAGCTCAAAGTTGACTCGA
          1 TTTTAAGCTCAAAGTTGACTCGA

       3496 GATACAATCG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Consensus pattern (24 bp):   
TTTTAAGCTCAAAGTTGACTCGAA
Done.