Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00078.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3811
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30


Found at i:94 original size:22 final size:22

Alignment explanation


    Indices: 54--110  Score: 93
    Period size: 22  Copynumber: 2.7  Consensus size: 22

         44 AAAAAAATCC

                                  
         54 AAAA-TAT-ATTTT-TTTTGAA
          1 AAAAGTATCATTTTCTTTTGAA

                                  
         73 AAAAGTATCATTTTCTTTTGAA
          1 AAAAGTATCATTTTCTTTTGAA

                            
         95 AAAAGTATCATTTTCT
          1 AAAAGTATCATTTTCT

        111 AGTTTTATTT


Statistics
Matches: 35,  Mismatches: 0, Indels: 3
        0.92            0.00        0.08

Matches are distributed among these distances:
  19    4  0.11
  20    3  0.09
  21    5  0.14
  22   23  0.66

ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47


Consensus pattern (22 bp):   
AAAAGTATCATTTTCTTTTGAA
Done.