Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00082.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4542
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36


Found at i:397 original size:52 final size:50

Alignment explanation


    Indices: 312--413  Score: 159
    Period size: 52  Copynumber: 2.0  Consensus size: 50

        302 TAATTGGTTA

                                *       *                     
        312 GTAGCTTTTGTTTTTTAAAATTATATTTTTATGTTATTAGTTTTATCTGC
          1 GTAGCTTTTGTTTTTTAAAACTATATTTCTATGTTATTAGTTTTATCTGC

                              *                                 
        362 GTAGCTTTTGTTTTTTTTTAAACTATATTTCTATGTTATTAGTTTTATCTGC
          1 GTAGCTTTTG--TTTTTTAAAACTATATTTCTATGTTATTAGTTTTATCTGC

        414 TTGGTACTTG


Statistics
Matches: 47,  Mismatches: 3, Indels: 2
        0.90            0.06        0.04

Matches are distributed among these distances:
  50   10  0.21
  52   37  0.79

ACGTcount: A:0.21, C:0.08, G:0.12, T:0.60


Consensus pattern (50 bp):   
GTAGCTTTTGTTTTTTAAAACTATATTTCTATGTTATTAGTTTTATCTGC
Done.