Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00087.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3255
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31


Found at i:1850 original size:64 final size:63

Alignment explanation


    Indices: 1789--1907  Score: 179
    Period size: 63  Copynumber: 1.9  Consensus size: 63

       1779 ATTTTTTTTC

                                                                             
       1789 CCAAGTTAAACTCTGAACTTGGCAATTGTTC-CACATTGTGG-CTTGAACATTTTTTTCTTTTTG
          1 CCAAGTTAAAC-CTGAACTTGGCAATTGTTCTCACATTG-GGACTTGAAC-TTTTTTTCTTTTTG

             
       1852 T
         63 T

                    **                                             
       1853 CCAAGTTAGGCCTGAACTTGGCAATTGTTCTCACATTGGGACTTGAACTTTTTTT
          1 CCAAGTTAAACCTGAACTTGGCAATTGTTCTCACATTGGGACTTGAACTTTTTTT

       1908 GTCCAAGTTA


Statistics
Matches: 51,  Mismatches: 2, Indels: 5
        0.88            0.03        0.09

Matches are distributed among these distances:
  63   28  0.55
  64   23  0.45

ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41


Consensus pattern (63 bp):   
CCAAGTTAAACCTGAACTTGGCAATTGTTCTCACATTGGGACTTGAACTTTTTTTCTTTTTGT
Done.