Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00088.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1111
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34


Found at i:546 original size:46 final size:46

Alignment explanation


    Indices: 486--759  Score: 406
    Period size: 46  Copynumber: 6.0  Consensus size: 46

        476 TTTGACGTGA

                  *  *         *          *         *   *  
        486 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
          1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT

                                         ** *      *   *  
        532 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
          1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT

                                    *         *           
        578 TGCCATGGTATCTTTCAACCATGGCCTTACACATCTCATATCAGGT
          1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT

                                                          
        624 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
          1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT

                                                          
        670 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
          1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT

                                           *            
        716 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
          1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG

        760 AGAGCACACT


Statistics
Matches: 211,  Mismatches: 16, Indels: 2
        0.92            0.07        0.01

Matches are distributed among these distances:
  45    4  0.02
  46  207  0.98

ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39


Consensus pattern (46 bp):   
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT

Done.