Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00096.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1869
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:149 original size:32 final size:32

Alignment explanation


    Indices: 103--169  Score: 125
    Period size: 32  Copynumber: 2.1  Consensus size: 32

         93 AGCATAAGGC

                                            
        103 TTCAGTTTCTTTAATTAATTTTTTTGGTTTCT
          1 TTCAGTTTCTTTAATTAATTTTTTTGGTTTCT

                *                           
        135 TTCATTTTCTTTAATTAATTTTTTTGGTTTCT
          1 TTCAGTTTCTTTAATTAATTTTTTTGGTTTCT

               
        167 TTC
          1 TTC

        170 TCCTCAAGGG


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   34  1.00

ACGTcount: A:0.15, C:0.10, G:0.07, T:0.67


Consensus pattern (32 bp):   
TTCAGTTTCTTTAATTAATTTTTTTGGTTTCT
Done.