Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00097.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2504
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:75 original size:12 final size:12

Alignment explanation


    Indices: 58--83  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

         48 AACTCTCTCT

                        
         58 CTCGCTCGTTCG
          1 CTCGCTCGTTCG

                        
         70 CTCGCTCGTTCG
          1 CTCGCTCGTTCG

              
         82 CT
          1 CT

         84 TGTTCCTCCG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.00, C:0.42, G:0.23, T:0.35


Consensus pattern (12 bp):   
CTCGCTCGTTCG
Done.