Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00123.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4609
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.38


Found at i:485 original size:3 final size:3

Alignment explanation


    Indices: 465--498  Score: 50
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        455 TTATTGTTCA

                 *        *                              
        465 TGT TCT TGT TGC TGT TGT TGT TGT TGT TGT TGT T
          1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT T

        499 AACATTTTTC


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.00, C:0.06, G:0.29, T:0.65


Consensus pattern (3 bp):   
TGT
Done.