Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00151.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1626
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:136 original size:15 final size:15

Alignment explanation


    Indices: 116--150  Score: 61
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        106 CTGCCACCAC

                           
        116 CACCACCACCAGCAG
          1 CACCACCACCAGCAG

                    *      
        131 CACCACCAGCAGCAG
          1 CACCACCACCAGCAG

                 
        146 CACCA
          1 CACCA

        151 TACCTCCGCC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.34, C:0.51, G:0.14, T:0.00


Consensus pattern (15 bp):   
CACCACCACCAGCAG

Found at i:139 original size:12 final size:12

Alignment explanation


    Indices: 109--150  Score: 57
    Period size: 12  Copynumber: 3.5  Consensus size: 12

         99 TCATGGCCTG

                  *  *  
        109 CCACCACCACCA
          1 CCACCAGCAGCA

                        
        121 CCACCAGCAGCA
          1 CCACCAGCAGCA

                        
        133 CCACCAGCAGCA
          1 CCACCAGCAGCA

            *     
        145 GCACCA
          1 CCACCA

        151 TACCTCCGCC


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   27  1.00

ACGTcount: A:0.33, C:0.55, G:0.12, T:0.00


Consensus pattern (12 bp):   
CCACCAGCAGCA

Found at i:1007 original size:5 final size:6

Alignment explanation


    Indices: 989--1015  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        979 TGAAGCAGAG

                                           
        989 AATAAA AATAAA AATAAA AATAAA AAT
          1 AATAAA AATAAA AATAAA AATAAA AAT

       1016 GGTGAGCTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19


Consensus pattern (6 bp):   
AATAAA
Done.