Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00155.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3313
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:3145 original size:77 final size:76

Alignment explanation


    Indices: 3042--3191  Score: 212
    Period size: 77  Copynumber: 2.0  Consensus size: 76

       3032 GCTAGTCTTC

                       *                                        *   *  *     
       3042 AAGAAACTCGATAATGATTCTGATACTCAAGCAACTGGCAGTCAAGAAGCTTTATCTCAGACTGT
          1 AAGAAACTCGACAATGATTCTGATACTCAAGCAACTGGCAGTCAAGAAGCTTCATCACAAACTGT

                       
       3107 CTGAAAGTTGG
         66 CTGAAAGTTGG

                                         **              *                   
       3118 AAGAAACTCAGACAATGATT-TGGATACTTGAGCAACTGGCAGTCGAGAAGCTTCATCACAAACT
          1 AAGAAACTC-GACAATGATTCT-GATACTCAAGCAACTGGCAGTCAAGAAGCTTCATCACAAACT

                      
       3182 GTCTGAAAGT
         64 GTCTGAAAGT

       3192 GAATAACTTT


Statistics
Matches: 65,  Mismatches: 7, Indels: 3
        0.87            0.09        0.04

Matches are distributed among these distances:
  76   10  0.15
  77   55  0.85

ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25


Consensus pattern (76 bp):   
AAGAAACTCGACAATGATTCTGATACTCAAGCAACTGGCAGTCAAGAAGCTTCATCACAAACTGT
CTGAAAGTTGG
Done.