Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00156.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2346
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32


Found at i:244 original size:103 final size:103

Alignment explanation


    Indices: 60--252  Score: 250
    Period size: 103  Copynumber: 1.9  Consensus size: 103

         50 GGTAATTGAA

                      *                                               *      
         60 TTTCAAGCTTTAAACTTGAATCGGGTCTTCTCCATTTGCTTATATAAGCCTCAAAGTTGAATTTT
          1 TTTCAAGCTTCAAACTTGAATCGGGTCTTCTCCATTTGCTTATATAAGCCTCAAAGTTAAATTTT

              *                                   
        125 TTTGTTGTGTTCATGCCAAAATAATTCTCTGTTTCTGG
         66 TTCGTTGTGTTCATGCCAAAATAATTCTCTGTTTCTGG

                                          *  *    *     *                    
        163 TTTCAAGCTTCAAACTTGAAAT-GGGTCTTTTCTATTTTCTTATGTAAGCCTCAAAGTTCAAACT
          1 TTTCAAGCTTCAAACTTG-AATCGGGTCTTCTCCATTTGCTTATATAAGCCTCAAAGTT-AAA-T

                                    *    
        227 ATTTTTCGTT-T-TT-ATGCCAAATTAAT
         63 -TTTTTCGTTGTGTTCATGCCAAAATAAT

        253 ATACTTTCTT


Statistics
Matches: 78,  Mismatches: 8, Indels: 8
        0.83            0.09        0.09

Matches are distributed among these distances:
 103   61  0.78
 104    7  0.09
 105    2  0.03
 106    8  0.10

ACGTcount: A:0.25, C:0.17, G:0.13, T:0.44


Consensus pattern (103 bp):   
TTTCAAGCTTCAAACTTGAATCGGGTCTTCTCCATTTGCTTATATAAGCCTCAAAGTTAAATTTT
TTCGTTGTGTTCATGCCAAAATAATTCTCTGTTTCTGG
Done.