Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00167.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8315
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:3085 original size:30 final size:30

Alignment explanation


    Indices: 3051--3112  Score: 124
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       3041 AATCTATTCA

                                          
       3051 GGATGCAAGACCATCAGATCAGGTTGTTAT
          1 GGATGCAAGACCATCAGATCAGGTTGTTAT

                                          
       3081 GGATGCAAGACCATCAGATCAGGTTGTTAT
          1 GGATGCAAGACCATCAGATCAGGTTGTTAT

              
       3111 GG
          1 GG

       3113 TTGGCTGCTG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26


Consensus pattern (30 bp):   
GGATGCAAGACCATCAGATCAGGTTGTTAT

Found at i:6553 original size:36 final size:36

Alignment explanation


    Indices: 6503--6573  Score: 133
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       6493 AACAAAAAAA

                     *                          
       6503 TTCCCCCATTATTGATTATAGCATACTAGGTAGAAT
          1 TTCCCCCATCATTGATTATAGCATACTAGGTAGAAT

                                               
       6539 TTCCCCCATCATTGATTATAGCATACTAGGTAGAA
          1 TTCCCCCATCATTGATTATAGCATACTAGGTAGAA

       6574 CTGCTACATG


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   34  1.00

ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34


Consensus pattern (36 bp):   
TTCCCCCATCATTGATTATAGCATACTAGGTAGAAT
Done.