Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00167.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8677
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:3447 original size:30 final size:30

Alignment explanation


    Indices: 3413--3474  Score: 124
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       3403 AATCTATTCA

                                          
       3413 GGATGCAAGACCATCAGATCAGGTTGTTAT
          1 GGATGCAAGACCATCAGATCAGGTTGTTAT

                                          
       3443 GGATGCAAGACCATCAGATCAGGTTGTTAT
          1 GGATGCAAGACCATCAGATCAGGTTGTTAT

              
       3473 GG
          1 GG

       3475 TTGGCTGCTG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26


Consensus pattern (30 bp):   
GGATGCAAGACCATCAGATCAGGTTGTTAT

Found at i:6915 original size:36 final size:36

Alignment explanation


    Indices: 6865--6935  Score: 133
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       6855 AACAAAAAAA

                     *                          
       6865 TTCCCCCATTATTGATTATAGCATACTAGGTAGAAT
          1 TTCCCCCATCATTGATTATAGCATACTAGGTAGAAT

                                               
       6901 TTCCCCCATCATTGATTATAGCATACTAGGTAGAA
          1 TTCCCCCATCATTGATTATAGCATACTAGGTAGAA

       6936 CTGCTACATG


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   34  1.00

ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34


Consensus pattern (36 bp):   
TTCCCCCATCATTGATTATAGCATACTAGGTAGAAT
Done.