Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00172.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1192
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35


Found at i:957 original size:12 final size:12

Alignment explanation


    Indices: 940--964  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        930 TCAGTCCCTG

                        
        940 TGGGATTGACCA
          1 TGGGATTGACCA

                        
        952 TGGGATTGACCA
          1 TGGGATTGACCA

             
        964 T
          1 T

        965 ACTTATCTAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28


Consensus pattern (12 bp):   
TGGGATTGACCA
Done.