Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00174.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 213

Length: 356
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.37


Found at i:37 original size:26 final size:26

Alignment explanation


    Indices: 1--50  Score: 100
    Period size: 26  Copynumber: 1.9  Consensus size: 26

                                      
          1 GGTTAGGTAAATGTTTCATGATAATG
          1 GGTTAGGTAAATGTTTCATGATAATG

                                    
         27 GGTTAGGTAAATGTTTCATGATAA
          1 GGTTAGGTAAATGTTTCATGATAA

         51 GAATTTCATG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38


Consensus pattern (26 bp):   
GGTTAGGTAAATGTTTCATGATAATG
Done.